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| UCDavis Chemistry Home Goodin Lab Research Lab members Publications Positions Latest News |
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| Goodin Lab Publications |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2013 Myers, W.K., Lee, Y.-T., Britt, R. D. and Goodin, D.B. (2013) "The Conformation of P450cam in Complex with Putidaredoxin Is Dependent on Oxidation State", J. Am. Chem. Soc 135, 11732. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2013 Barelier, S., Boyce, S.E., Fish, I., Fischer, M., Goodin, D.B., and Shoichet, B.K. (2013) "Roles for Ordered and Bulk Solvent in Ligand Recognition and Docking in Two Related Cavities", PLoS ONE 8, 69153. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2012 Stoll, S., Lee, Y.-T., Zhang, M., Wilson, R.F., Britt, R.D. and Goodin, D.B. (2012) "Double electron-electron resonance shows cytochrome P450cam undergoes a conformational change in solution upon binding substrate", Proc. Natl. Acad. Sci. USA, 109, 12888-12893. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2011 Markwick, Phineus R.L., Pierce, Levi C.T., Goodin, David B. and McCammon, J. Andrew (2011) "Adaptive accelerated molecular dynamics reveals the molecular plasticity of P450cam", J. Phys. Chem. Lett., 2, 158-164. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2011 Lee, Y.-T., Glazer, E.C., Wilson, R.F., Stout, C.D. and Goodin, D.B. (2011) "Three clusters of conformational states in P450cam reveal a multi-step pathway for closing of the substrate access channel", Biochemistry, 50, 693-703. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2011 Jensen, G.M. and Goodin, D.B. (2011) "Impact of proximal and distal pocket site-directed mutations on the ferric/ferrous heme redox potential of yeast cytochrome c peroxidase", Theor. Chem. Acc., 130, 1185-1196. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2010 Nigro, A.P., and Goodin, D.B. (2010) “Reaction of N-hydroxyguanidine with the ferrous-oxy state of a heme peroxidase cavity mutant: A model for the reactions of nitric oxide synthase”, Arch. Biochem. Biophys., 500, 66-73. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2010 Lee, Y.-T., Wilson, R.F., Rupniewski, I. and Goodin, D.B. (2010) “P450cam visits an open conformation in the absence of substrate”, Biochemistry 49, 3412-3419. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2010 Annalora, A. J., Goodin, D.B., Hong, W.-X., Zang, Q., Johnson, E.F., Stout, C.D. (2010) “Crystal Structure of CYP24A1, a Mitochondrial Cytochrome P450 Involved in Vitamin D Metabolism”, J. Mol. Biol. 396, 441-451. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2009 Putnam, A.-M. A. H., Lee, Y.-T. and Goodin D.B. (2009) “Replacement of an Electron Transfer Pathway in Cytochrome c Peroxidase with a Surrogate Peptide”, Biochemistry, 48, 1. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2008 Glazer, E.C., Le Nguyen, Y.H., Gray, H.B., and Goodin, D.B. (2008) “Probing Inducible Nitric Oxide Synthase with a Pterin-Ru(II) Sensitizer Wire”, Angew. Chemie, 47, 898. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2007 Contakes, S.M., Nguyen, Y.H.L., Gray, H.B., Glazer, E.C., Hays, A.-M.A., and Goodin, D.B. (2006) “Conjugates of Heme-Thiolate Enzymes with Photoactive Metal-Diimine Wires”, in Structure & Bonding, Springer-Verlag, Berlin/Heidelberg, 123,177. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2006 Brenk, R., Vetter, S., Boyce, S.E., Goodin, D.B., and Shoichet, B. (2006) “Probing Molecular Docking in a Charged Model Binding Site,” J. Mol. Biol, 357, 1449. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2005 Udit, A.K., Belliston-Bittner, W., Glazer, E.C., Nguyen, Y.H.L., Gillan, J.M., Hill, M.G., Marletta, M.A., Goodin, D.B., Gray, H.B. (2005) “Redox Couples of Inducible Nitric Oxide Synthase,” J. Am. Chem. Soc 127, 11212. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2004 Hays, A.-M.A., Dunn, A.R., Chiu, R., Gray, H.B., Stout, C.D., and Goodin, D.B. (2004) “Conformational States of Cytochrome P450cam Revealed by Trapping of Synthetic Molecular Wires,” J. Mol. Biol 344, 455. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2004 Kroeck, L., Shivanyuk, A., Goodin, D.B., and Rebek, J., Jr. (2004) "Spin Labeling Monitors Weak Host-Guest Interactions,” Chemical Communications 3, 272. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2003 Rosenfeld, R.J., Goodsell, D.S., Musah, R.A., Morris, G.M., Goodin, D.B., and Olson, A.J. (2003) "Automated Docking of Ligands to an Artificial Active Site: Augmenting Crystallographic Analysis with Computer Modeling,” Journal of Computer-Aided Molecular Design 17, 525. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2003 Voegtle, H.L., Sono, M., Adak, S., Pond, A.E., Tomita, T., Perera, R., Goodin, D.B., Ikeda-Saito, M., Stuehr, D.J., and Dawson, J.H. (2003) "Spectroscopic Characterization of Five- and Six-Coordinate Ferrous-NO Heme Complexes. Evidence for Heme Fe- Proximal Cys Bond Cleavage in the Ferrous-NO Adducts of the Trp-409Tyr/Phe Proximal Environment Mutants of Neuronal NOS,” Biochemistry 42, 2475. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2003 Hays, A.-M.A., Gray, H.B., and Goodin, D.B. (2003) "Trapping of Peptide-Based Surrogates in an Artificially Created Channel of Cytochrome c Peroxidase,” Protein Science 12, 278. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2003 Bonagura, C.A., Bhaskar, B., Shimizu, H., Li, H., Sundaramoorthy, M., McRee, D.E., Goodin, D.B., and Poulos, T.L. (2003) "High-Resolution Crystal Structures and Spectroscopy of Native and Compound I Cytochrome c Peroxidase,” Biochemistry 42, 5600. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2002 Rosenfeld, R.J., Hays, A.-M.A., Musah, R.A., and Goodin, D.B. (2002) "Excision of a Proposed Electron Transfer Pathway in CCP and its Replacement by a Ligand-Binding Channel,” Protein Sci 11, 1251. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2002 Pond, A.E., Hirst, J., Goodin, D.B., and Dawson, J.H. (2002) in Oxygen and Life - Oxygenases, Oxidases and Lipid Mediators (Ishimura, Y. Ed) pp 25-35, Elsevier, Amsterdam. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2002 Musah, R.A., Jensen, G.M., Bunte, S.W., Rosenfeld, R.J., and Goodin, D.B. (2002) "Artificial Protein Cavities as Specific Ligand-Binding Templates: Characterization of an Engineered Heterocyclic Cation Binding Site that Preserves the Evolved Specificity of the Parent Protein,” J. Mol. Biol 315, 845. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2002 Dunn, A.R., Hays, A.-M.A., Goodin, D.B., Stout, C.D., Chiu, R., Winkler, J.R., and Gray, H.B. (2002) "Fluorescent Probes for Cytochrome P450 Structural Characterization and Inhibitor Screening,” J. Am. Chem. Soc 124, 10254. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2001 Pond, A.E., Ledbetter, A.P., Sono, M., Goodin, D.B., and Dawson, J.H. (2001) “Redox Enzymes: Correlation of Three-Dimensional Structure and Mechanism for Heme- Containing Oxygenases and Peroxidases,” in Electron Transfer in Chemistry (Balzani, V., Ed.) pp 56-104, Wiley-VCH, Weinheim. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2001 Ivancich, A., Dorlet, P., Goodin, D.B., and Un, S. (2001) "Multifrequency High-field EPR Study of the Trp and Tyr Radical Intermediates in WT and the W191G Mutant of CCP,” J. Am. Chem. Soc 123, 5050. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2001 Hirst, J., Wilcox, S.K., Ai, J., Moënne-Loccoz, P., Loehr, T.M., and Goodin, D.B. (2001) "Replacement of the Axial Histidine Ligand with Imidazole in Cytochrome c Peroxidase.2. Effects on Heme Coordination and Function,” Biochemistry 40, 1274. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2001 Hirst, J., Wilcox, S.K., Williams, P.A., Blankenship, J., McRee, D.E., and Goodin, D.B. (2001) "Replacement of the Axial Histidine Ligand with Imidazole in Cytochrome c Peroxidase. 1. Effects on Structure,” Biochemistry 40, 1265. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2001 Bunte, S.W., Jensen, G.M., McNesby, K.L., Goodin, D.B., Chabalowski, C.F., Neiminen, R.M., Suhai, S., and Jalkanen, K.J. (2001) "Theoretical Determination of the Vibrational Absorption and Raman Spectra of 3-methylindole and 3-methylindole Radicals,” Chemical Physics 265, 13. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2001 Bateman, L., Léger, C., Goodin, D.B., and Armstrong, F.A. (2001) "A Distal Histidine Mutant (H52Q) of Yeast CcP Catalyzes the Oxidation of H2O2 instead of its Reduction,” J. Am. Chem. Soc 123, 9260. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2000 Vaino, A.R., Goodin, D.B., and Janda, K.D. (2000) "Investigating Resins for Solid Phase Organic Synthesis: The Relationship Between Swelling and Microenvironment As Probed By EPR and Fluorescence,” J. Comb. Chem 2, 330. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1999 Hirst, J., and Goodin, D.B. (2000) "Unusual oxidative chemistry of Nω-hydroxyarginine and N-hydroxyguanidine catalyzed at an engineered cavity in a heme peroxidase,” J. Biol. Chem 275, 8582. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1999 Viles, J.H., Cohen, F.E., Prusiner, S.B., Goodin, D.B., Wright, P.E., and Dyson, H.J. (1999) "Copper binding to prion protein: Structural implications of four identical cooperative binding sites,” Proc. Natl. Acad. Sci. USA 96, 2042. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1999 Schipke, C.G., Goodin, D.B., McRee, D.E., and Stout, C.D. (1999) "Oxidized and Reduced Azotobacter vinelandii Ferredoxin I at 1.4 Å Resolution: Conformational Change of Surface Residues without Significant Change in the [3Fe-4S]+/0 Cluster,” Biochemistry 38, 8228. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1999 Pond, A.E., Sono, M., Elenkova, E.A., Goodin, D.B., English, A.M., and Dawson, J.H. (1999) "Influence of Protein Environment on Magnetic Circular Dichroism Spectral Properties of Ferric and Ferrous Ligand Complexes of Yeast Cytochrome c Peroxidase,” Biospectroscopy 5, 42. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1999 Pond, A.E., Sono, M., Elenkova, E.A., McRee, D.E., Goodin, D.B., English, A.M., and Dawson, J.H. (1999) "MCD Studies of Cytochrome c Peroxidase From Yeast: Investigation of the Effects of Aging and pH on the Active Site Heme Coordination Sphere of the Ligand-Free Ferric State,” J. Inorg. Biochem 76, 165. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1998 Wilcox, S.K., Putnam, C.D., Sastry, M., Blankenship, J., Chazin, W.J., McRee, D.E., and Goodin, D.B. (1998) "Rational Design of a Functional Metalloenzyme: Introduction of a Site for Manganese Binding and Oxidation into a Heme Peroxidase,” Biochemistry 37, 16853. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1998 Wilcox, S.K., Putnam, C.D., Sastry, M., Blankenship, J., Chazin, W.J., McRee, D.E., and Goodin, D.B. (1998) "Rational Design of a Functional Metalloenzyme: Introduction of a Site for Manganese Binding and Oxidation into a Heme Peroxidase,” Biochemistry 37, 16853. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1998 Mondal, M.S., Goodin, D.B., and Armstrong, F.A. (1998) "Simultaneous Voltammetric Comparisons of Reduction Potentials, Reactivities, and Stabilities of the High-Potential Catalytic States of Wild-Type and Distal-Pocket Mutant (W51F) Yeast Cytochrome c Peroxidase,” J. Am. Chem. Soc 120, 6270. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1998 Liu, K., Williams, J., Lee, H., Fitzgerald, M.M., Jensen, G.M., Goodin, D.B., and McDermott, A.E. (1998) "Solid-State Deuterium NMR of Imidazole Ligands in CcP,” J. Am. Chem. Soc 120, 10199. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1998 Jensen, G.M., Bunte, S.W., Warshel, A., and Goodin, D.B. (1998) "Energetics of Cation Radical Formation at the Proximal Active Site Trp of CCP and Ascorbate Peroxidase,” J. Phys. Chem. B 102, 8221. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1997 Cao, Y., Musah, R.A., Wilcox, S.K., Goodin, D.B., and McRee, D.E. (1998) "Protein Conformer Selection by Ligand Binding Observed with Crystallography,” Protein Science 7, 72. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1997 Sun, J., Fitzgerald, M.M., Goodin, D.B., and Loehr, T.M. (1997) "The Solution and Crystal Structures of the H175G Mutant of CcP: A Resonance Raman Study,” J. Am. Chem. Soc 119, 2064. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1997 Musah, R.A., and Goodin, D.B. (1997) "Introduction of Novel Substrate Oxidation into a Heme Peroxidase by Cavity Complementation: Oxidation of 2-aminothiazole and Covalent Modification of the Enzyme,” Biochemistry 36, 11665. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1997 Musah, R.A., Jensen, G.M., Rosenfeld, R.J., Bunte, S.W., McRee, D.E., and Goodin, D.B. (1997) “Variation in Strength of a CH to O Hydrogen Bond in an Artificial Cavity,” J. Am. Chem. Soc 119, 9083. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1997 Sarma, S., DiGate, R.J., Goodin, D.B., Miller, C.J., and Guiles, R.D. (1997) “Effect of Axial Ligand Plane Reorientation on Electronic and Electrochemical Properties Observed in Site Directed Mutants of Rat Cytochrome b5,” Biochemistry 36, 5658. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1997 Sun, J., Fitzgerald, M.M., Goodin, D.B., and Loehr, T.M. (1997) “The Solution and Crystal Structures of the H175G Mutant of Cytochrome c Peroxidase: A Resonance Raman Study,” J. Am. Chem. Soc 119, 2064. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1996 Goodin, D. B. (1996) “When an Amide is More Like Histidine than Imidazole: the Role of Axial Ligands in Heme Catalysis,” J. Biol. Inorg. Chem 1, 360. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1996 Goodin, D. B. (1996) “When an Amide is More Like Histidine than Imidazole: the Role of Axial Ligands in Heme Catalysis,” J. Biol. Inorg. Chem 1, 360. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1996 Smulevich, G., Hu, S., Rodgers, K.R., Goodin, D.B., Smith, K.M., and Spiro, T. G. (1996) “Heme-Protein Interactions in CcP Revealed by Site-Directed Mutagenesis and Resonance Raman Spectra of Isotopically-Labeled Hemes,” Biospectroscopy 2, 365. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1996 Fitzgerald, M.M., Musah, R.A., McRee, D. E., and Goodin, D.B. (1996) “A Ligand- Gated, Hinged Loop Rearrangement Opens a Channel to a Buried Artificial Protein Cavity,” Nature Structural Biology 3, 626. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1996 Wilcox, S.K., Jensen, G.M., Fitzgerald, M.M., McRee, D.E., and Goodin, D.B. (1996) |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1996 Jensen, G.M., Goodin, D.B., and Bunte, S.W. (1996) “Density Functional and MP2 Calculations of Spin Densities of Oxidized 3-methyl indole: Models for Tryptophan Radicals,” J. Phys. Chem 100, 954. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1995 Huyett, J.E., Doan, P.E., Gurbiel, R., Houseman, A.L.P., Sivaraja, M., Goodin, D.B., and Hoffman, B.M. (1995) “Compound ES of Cytochrome c Peroxidase Contains a Trp π- Cation Radical: Characterization by CW and Pulsed Q-Band ENDOR,” J. Am. Chem. Soc 117, 9033. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1995 Miller, V.P., Goodin, D.B., Friedman, A.E., Hartmann, C., and Ortiz de Montellano, P.R. (1995) “Horseradish Peroxidase Phe-172 > Tyr Mutant: Sequential Formation of Compound I with a Porphyrin Radical Cation and a Protein Radical,” J. Biol. Chem 270, 18413. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1995 Patterson, W.R., Poulos, T.L., and Goodin, D.B. (1995) "Identification of a Porphyrin π- Cation Radical in Ascorbate Peroxidase Compound I,” Biochemistry 34, 4342. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1994 Fitzgerald, M.M., McRee, D.E., Churchill, M.J., and Goodin, D.B. (1994) "Small Molecule Binding to an Artificially Created Cavity at the Active Site of Cytochrome c Peroxidase,” Biochemistry 33, 3807. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1994 Goodin, D.B., and McRee, D.E. (1993) "The Asp-His-Fe Triad of Cytochrome c Peroxidase Controls the Reduction Potential, Electronic Structure, and Coupling of the Tryptophan Free Radical to the Heme,” Biochemistry 32, 3313. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1993 Roe, J.A., and Goodin, D.B. (1993) "Enhanced Oxidation of Aniline Derivatives by Two Mutants of Cytochrome c Peroxidase at Tryptophan 51,” J. Biol. Chem 268, 20037. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1993 Goodin, D.B., and McRee, D.E. (1993) "The Asp-His-Fe Triad of Cytochrome c Peroxidase Controls the Reduction Potential, Electronic Structure, and Coupling of the Tryptophan Free Radical to the Heme,” Biochemistry 32, 3313. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1993 Houseman, A.L.P., Doan, P.E., Goodin, D.B., and Hoffman, B.M. (1993) "Comprehensive Explanation of the Anomalous EPR Spectra of Wild-Type and Mutant Cytochrome c Peroxidase Compound ES,” Biochemistry 32, 4430. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1991 Goodin, D.B., Davidson, M.G., Roe, J.A., Mauk, A.G., and Smith, M. (1991) "Amino Acid Substitutions at Tryptophan-51 of Cytochrome c Peroxidase - Effects on Coordination, Species Preference for Cytochrome c, and Electron Transfer,” Biochemistry 30, 4953. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1990 Watson, W.H., Nagl, A., Marchand, A.P., Vidyasagar, V., and Goodin, D.B. (1990) "Structure of a Dimer Ketone Formed via Iron Carbonyl-Promoted Coupling of 7- Phenylnorbornadiene with Carbon Monoxide,” Acta Crystallogr. C46, 1127. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1989 Sivaraja, M., Goodin, D.B., Smith, M., and Hoffman, B.M. (1989) "Identification by ENDOR of Trp191 as the Free-Radical Site in Cytochrome C Peroxidase Compound ES,” Science 245, 738. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1988 Kroeck, L., Shivanyuk, A., Goodin, D.B., and Rebek, J., Jr. (2004) "Spin Labeling Monitors Weak Host-Guest Interactions,” Chemical Communications 3, 272. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1988 Ner, S.S., Goodin, D.B., and Smith, M. (1988) "A Simple and Efficient Procedure for Generating Random Point Mutations and for Codon Replacements Using Mixed Oligodeoxynucleotides,” DNA 7, 127. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1987 Smith, M., Cutler, R.L., Goodin, D.B., Mauk, A.G., and Pielak, G.J. (1987) "Structure- Function Studies on Yeast Heme Proteins Using Oligonucleotide Mutagenesis,” UCLA Symp. Mol. Cell. Biol., New Ser 69, 167. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1987 Goodin, D.B., Mauk, A.G., and Smith, M. (1987) "The Peroxide Complex of Yeast Cytochrome c Peroxidase Contains Two Distinct Radical Species, Neither of which Resides at Methionine 172 or Tryptophan 51,” J. Biol. Chem 262, 7719. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1986 Compound ES of Cytochrome c Peroxidase Altered by Site-Directed Mutagenesis,” Proc. Natl. Acad. Sci. U.S.A 83, 1295. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1984 Marchand, A.P., Goodin, D.B., Hossain, M.B., and Van der Helm, D. (1984) "Stereochemistry of the Reaction of 7-Substituted Norbornadienes with Iron Carbonyls. 2. Reaction of Fe(CO)5 with 7-Phenyl- and 7-o-Anisylnorbornadiene,” J. Org. Chem 49, 2897. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1984 Goodin, D.B., Yachandra, V.K., Britt, R.D., Sauer, K., and Klein, M.P. (1984) "The State of Manganese in the Photosynthetic Apparatus. 3. Light-Induced Changes in X-Ray Absorption (K-Edge) Energies of Manganese in Photosynthetic Membranes,” Biochim. Biophys. Acta 767, 209. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1984 Goodin, D.B., Yachandra, V.K., Guiles, R., Britt, R.D., McDermott, A., Sauer, K., and Klein, M.P. (1984) "Light-Induced Changes in X-Ray Absorption (K-Edge) Energies of Manganese in Photosynthetic Membranes,” in EXAFS and Near Edge Structure III (Hodgson, K.O., Hedman, B., and Penner-Hahn, J.E., eds.), pp. 130, Springer-Verlag, Berlin. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1982 Acrivos, J.V., Hathaway, K., Reynolds, J., Code, J., Parkin, S., Klein, M.P., Thompson, A., and Goodin, D.B. (1982) "Measurement of Synchrotron X-Ray Energies and Line Shapes Using Diffraction Markers,” Rev. Sci. Instrum. 53, 575. Link to PDF |
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. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1981 Kirby, J.A., Goodin, D.B., Wydrzynski, T., Robertson, A.S., and Klein, M.P. (1981) "State of Manganese in the Photosynthetic Apparatus. 2. X-ray Absorption Edge Studies on Manganese in Photosynthetic Membranes,” J. Am. Chem. Soc 103, 5537. Link to PDF |
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